ENSDARG00000043856


Danio rerio

Features
Gene ID: ENSDARG00000043856
  
Biological name :amd1
  
Synonyms : adenosylmethionine decarboxylase 1 / amd1
  
Possible biological names infered from orthology : Amd2 / D3Z6H8 / P0DMN7 / P17707 / S-adenosylmethionine decarboxylase proenzyme 1 S-adenosylmethionine decarboxylase 1 alpha chain S-adenosylmethionine decarboxylase 1 beta chain / S-adenosylmethionine decarboxylase proenzyme 2 S-adenosylmethionine decarboxylase 2 alpha chain S-adenosylmethionine decarboxylase 2 beta chain
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 2950005
Gene end: 2978968
  
Corresponding Affymetrix probe sets: Dr.25148.1.S1_at (Zebrafish Array)   Dr.25148.1.S1_x_at (Zebrafish Array)   Dr.25148.2.A1_at (Zebrafish Array)   Dr.2999.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000119077
NCBI entrez gene - 792097     See in Manteia.
RefSeq - NM_001161601
RefSeq Peptide - NP_001155073
swissprot - Q7ZVU7
ZFIN ID - ZDB-GENE-040426-760
Ensembl - ENSDARG00000043856
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AMD1ENSGALG00000039575Gallus gallus
 AMD1ENSG00000123505Homo sapiens
 Amd1ENSMUSG00000075232Mus musculus
 Amd2ENSMUSG00000063953Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001985  S-adenosylmethionine decarboxylase
 IPR016067  S-adenosylmethionine decarboxylase, core
 IPR018166  S-adenosylmethionine decarboxylase, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006557 S-adenosylmethioninamine biosynthetic process IEA
 biological_processGO:0006596 polyamine biosynthetic process IEA
 biological_processGO:0006597 spermine biosynthetic process IBA
 biological_processGO:0008295 spermidine biosynthetic process IBA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004014 adenosylmethionine decarboxylase activity IBA
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0016831 carboxy-lyase activity IEA


Pathways (from Reactome)
Pathway description
Metabolism of polyamines


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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