ENSDARG00000045155


Danio rerio

Features
Gene ID: ENSDARG00000045155
  
Biological name :phf5a
  
Synonyms : PHD finger protein 5A / phf5a
  
Possible biological names infered from orthology : P83870 / PHD finger-like domain-containing protein 5A / Q7RTV0
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 19138452
Gene end: 19143692
  
Corresponding Affymetrix probe sets: Dr.17446.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000066396
Ensembl peptide - ENSDARP00000113996
NCBI entrez gene - 286774     See in Manteia.
swissprot - E9QHY3
swissprot - Q6YMR2
ZFIN ID - ZDB-GENE-021219-3
Ensembl - ENSDARG00000045155
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PHF5AENSGALG00000011953Gallus gallus
 PHF5AENSG00000100410Homo sapiens
 Phf5aENSMUSG00000061360Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005345  PHF5-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000106 extension extension constricted , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
eye necrotic , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0001094 whole organism whole organism curved , abnormal
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 ZFA:0001114 head head decreased size , abnormal
head necrotic , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk bent , abnormal
trunk necrotic , abnormal
trunk curved dorsal , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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