ENSMUSG00000061360


Mus musculus

Features
Gene ID: ENSMUSG00000061360
  
Biological name :Phf5a
  
Synonyms : P83870 / PHD finger-like domain-containing protein 5A / Phf5a
  
Possible biological names infered from orthology : PHD finger protein 5A / Q7RTV0
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: E1
Gene start: 81864520
Gene end: 81871911
  
Corresponding Affymetrix probe sets: 10430778 (MoGene1.0st)   1424170_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000023117
NCBI entrez gene - 68479     See in Manteia.
MGI - MGI:2156864
RefSeq - NM_026737
RefSeq Peptide - NP_081013
swissprot - P83870
Ensembl - ENSMUSG00000061360
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phf5aENSDARG00000045155Danio rerio
 PHF5AENSGALG00000011953Gallus gallus
 PHF5AENSG00000100410Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005345  PHF5-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005686 U2 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0016363 nuclear matrix IDA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0006205 embryonic lethality before somite formation "death anytime after implantation but before somite formation (E4.5 to less than E8)" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Hsp90aa1Tg(Tyr)2396BOve/Hsp90aa1Tg(Tyr)2396BOve
Genetic Background: FVB/N-Hsp90aa1Tg(Tyr)2396BOve

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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