ENSDARG00000045355


Danio rerio

Features
Gene ID: ENSDARG00000045355
  
Biological name :eloca
  
Synonyms : eloca / elongin C paralog a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 12983434
Gene end: 12988849
  
Corresponding Affymetrix probe sets: Dr.14394.1.S1_at (Zebrafish Array)   NM_001004673_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000066699
Ensembl peptide - ENSDARP00000117248
Ensembl peptide - ENSDARP00000121970
NCBI entrez gene - 447935     See in Manteia.
RefSeq - XM_005162640
RefSeq - XM_005162638
RefSeq - XM_017353824
RefSeq - NM_001004673
RefSeq - XM_017353823
RefSeq Peptide - NP_001004673
swissprot - Q66IB1
swissprot - E9QCI1
ZFIN ID - ZDB-GENE-040912-120
Ensembl - ENSDARG00000045355
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
elocb / elongin C paralog b / ELOC* / P83940* / Q15369* / elongin C*ENSDARG0000004535996


Protein motifs (from Interpro)
Interpro ID Name
 IPR001232  S-phase kinase-associated protein 1-like
 IPR011333  SKP1/BTB/POZ domain superfamily
 IPR016073  SKP1 component, POZ domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IBA
 cellular_componentGO:0070449 elongin complex IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr