ENSDARG00000045484


Danio rerio

Features
Gene ID: ENSDARG00000045484
  
Biological name :dcp1b
  
Synonyms : dcp1b / decapping mRNA 1B
  
Possible biological names infered from orthology : mRNA-decapping enzyme 1B / Q3U564 / Q8IZD4
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 20302832
Gene end: 20314796
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000066893
Ensembl peptide - ENSDARP00000112637
Ensembl peptide - ENSDARP00000152443
NCBI entrez gene - 568176     See in Manteia.
RefSeq - NM_001045155
RefSeq - XM_021475124
RefSeq Peptide - NP_001038620
swissprot - Q5RH08
swissprot - F1RC83
ZFIN ID - ZDB-GENE-040819-1
Ensembl - ENSDARG00000045484
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038402Gallus gallus
 DCP1BENSG00000151065Homo sapiens
 Dcp1bENSMUSG00000041477Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dcp1a / decapping mRNA 1A / Q9NPI6*ENSDARG0000010013624


Protein motifs (from Interpro)
Interpro ID Name
 IPR010334  mRNA-decapping enzyme subunit 1
 IPR011993  PH-like domain superfamily
 IPR031953  mRNA-decapping enzyme, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IBA
 biological_processGO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IBA
 biological_processGO:0043085 positive regulation of catalytic activity IEA
 cellular_componentGO:0000932 P-body IBA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0008047 enzyme activator activity IEA
 molecular_functionGO:0030234 enzyme regulator activity IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr