ENSDARG00000045487


Danio rerio

Features
Gene ID: ENSDARG00000045487
  
Biological name :rps16
  
Synonyms : ribosomal protein S16 / rps16
  
Possible biological names infered from orthology : P14131 / P62249
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 21648010
Gene end: 21652812
  
Corresponding Affymetrix probe sets: Dr.953.2.S1_at (Zebrafish Array)   NM_001076732_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000066897
Ensembl peptide - ENSDARP00000144303
NCBI entrez gene - 767765     See in Manteia.
RefSeq - NM_001076732
RefSeq Peptide - NP_001070200
swissprot - Q1LWH1
ZFIN ID - ZDB-GENE-050506-107
Ensembl - ENSDARG00000045487
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS16ENSGALG00000026490Gallus gallus
 RPS16ENSG00000105193Homo sapiens
 Rps16ENSMUSG00000037563Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000754  Ribosomal protein S9
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR020574  Ribosomal protein S9, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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