ENSGALG00000026490


Gallus gallus

Features
Gene ID: ENSGALG00000026490
  
Biological name :RPS16
  
Synonyms : ribosomal protein S16 / RPS16
  
Possible biological names infered from orthology : P14131 / P62249
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 39750306
Gene end: 39753558
  
Corresponding Affymetrix probe sets: Gga.4509.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000059442
Ensembl peptide - ENSGALP00000063380
Ensembl peptide - ENSGALP00000061899
Ensembl peptide - ENSGALP00000041159
Ensembl peptide - ENSGALP00000059162
NCBI entrez gene - 417871     See in Manteia.
RefSeq - XM_416113
swissprot - A0A1L1RX06
swissprot - A0A1L1RK80
swissprot - R4GGJ0
Ensembl - ENSGALG00000026490
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps16ENSDARG00000045487Danio rerio
 RPS16ENSG00000105193Homo sapiens
 Rps16ENSMUSG00000037563Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000754  Ribosomal protein S9
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR020574  Ribosomal protein S9, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006412 translation IEA
 biological_processGO:0042274 ribosomal small subunit biogenesis IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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