ENSDARG00000045814


Danio rerio

Features
Gene ID: ENSDARG00000045814
  
Biological name :samm50
  
Synonyms : samm50 / SAMM50 sorting and assembly machinery component
  
Possible biological names infered from orthology : Q8BGH2 / Q9Y512 / Sorting and assembly machinery component 50 homolog
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 19008497
Gene end: 19021823
  
Corresponding Affymetrix probe sets: Dr.6930.1.S1_at (Zebrafish Array)   NM_200142_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000095193
NCBI entrez gene - 393111     See in Manteia.
RefSeq - NM_200142
RefSeq Peptide - NP_956436
swissprot - F1QBE4
ZFIN ID - ZDB-GENE-040426-806
Ensembl - ENSDARG00000045814
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SAMM50ENSGALG00000014194Gallus gallus
 Q9Y512ENSG00000100347Homo sapiens
 Q8BGH2ENSMUSG00000022437Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
samm50l / sorting and assembly machinery component 50 homolog, like / Q9Y512* / SAMM50* / Q8BGH2* / SAMM50 sorting and assembly machinery component* / Sorting and assembly machinery compone...ENSDARG0000003968183


Protein motifs (from Interpro)
Interpro ID Name
 IPR000184  Bacterial surface antigen (D15)
 IPR034746  POTRA domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0019867 outer membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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