ENSDARG00000045999


Danio rerio

Features
Gene ID: ENSDARG00000045999
  
Biological name :saa
  
Synonyms : saa / serum amyloid A
  
Possible biological names infered from orthology : Mus musculus serum amyloid A 2 (Saa2), transcript variant 2, mRNA. / P04918 / P05366 / P05367 / P0DJI8 / P0DJI9 / P31532 / P35542 / SAA1 / SAA2 / SAA2-SAA4 / SAA2-SAA4 readthrough / Saa3 / SAA4 / serum amyloid A1 / serum amyloid A2 / Serum amyloid A-3 protein / serum amyloid A4, constitutive / Serum amyloid A-4 protein
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 12950507
Gene end: 12956434
  
Corresponding Affymetrix probe sets: Dr.13131.1.S1_at (Zebrafish Array)   NM_001005599_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000138355
Ensembl peptide - ENSDARP00000067628
NCBI entrez gene - 449557     See in Manteia.
RefSeq - NM_001005599
RefSeq Peptide - NP_001005599
swissprot - A0A0R4IQU0
swissprot - Q642J9
ZFIN ID - ZDB-GENE-040927-15
Ensembl - ENSDARG00000045999
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000027716Gallus gallus
 SAA1ENSG00000173432Homo sapiens
 SAA2ENSG00000134339Homo sapiens
 SAA2-SAA4ENSG00000255071Homo sapiens
 SAA4ENSG00000148965Homo sapiens
 Saa1ENSMUSG00000074115Mus musculus
 Saa2ENSMUSG00000057465Mus musculus
 Saa3ENSMUSG00000040026Mus musculus
 Saa4ENSMUSG00000040017Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000096  Serum amyloid A protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006953 acute-phase response IEA
 biological_processGO:0009617 response to bacterium IDA
 biological_processGO:0050918 positive chemotaxis IEA
 biological_processGO:0060326 cell chemotaxis IBA
 biological_processGO:1990266 neutrophil migration IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0034364 high-density lipoprotein particle IEA
 molecular_functionGO:0042056 chemoattractant activity IBA


Pathways (from Reactome)
Pathway description
Scavenging by Class B Receptors
G alpha (q) signalling events
G alpha (i) signalling events


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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