ENSDARG00000051888


Danio rerio

Features
Gene ID: ENSDARG00000051888
  
Biological name :ist1
  
Synonyms : increased sodium tolerance 1 homolog (yeast) / ist1
  
Possible biological names infered from orthology : IST1, ESCRT-III associated factor / P53990 / Q9CX00
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 56472568
Gene end: 56484798
  
Corresponding Affymetrix probe sets: Dr.1122.1.S1_at (Zebrafish Array)   NM_212585_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000068086
Ensembl peptide - ENSDARP00000116734
NCBI entrez gene - 321460     See in Manteia.
RefSeq - NM_212585
RefSeq - NM_001328509
RefSeq Peptide - NP_001315438
RefSeq Peptide - NP_997750
swissprot - F1R0S8
swissprot - Q7ZVT1
ZFIN ID - ZDB-GENE-030131-179
Ensembl - ENSDARG00000051888
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 IST1ENSGALG00000000811Gallus gallus
 IST1ENSG00000182149Homo sapiens
 Ist1ENSMUSG00000031729Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005061  Vacuolar protein sorting-associated protein Ist1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007032 endosome organization IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0048675 axon extension IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000075 spinal cord spinal cord motor neuron truncated , abnormal
spinal cord motor neuron branchiness , abnormal
Show

 ZFA:0001094 whole organism whole organism increased curvature , abnormal
whole organism decreased mobility , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr