ENSDARG00000054530


Danio rerio

Features
Gene ID: ENSDARG00000054530
  
Biological name :rars
  
Synonyms : arginyl-tRNA synthetase / rars
  
Possible biological names infered from orthology : Arginine--tRNA ligase, cytoplasmic / P54136 / Q9D0I9
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 35327328
Gene end: 35378321
  
Corresponding Affymetrix probe sets: Dr.947.1.S1_at (Zebrafish Array)   NM_200048_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000107383
Ensembl peptide - ENSDARP00000120272
Ensembl peptide - ENSDARP00000120711
Ensembl peptide - ENSDARP00000113410
NCBI entrez gene - 337070     See in Manteia.
RefSeq - NM_200048
RefSeq - XM_017352754
RefSeq Peptide - NP_956342
swissprot - F1QCM2
swissprot - E9QJM9
swissprot - F1QL29
swissprot - F1QLT9
ZFIN ID - ZDB-GENE-030131-9014
Ensembl - ENSDARG00000054530
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RARSENSGALG00000001850Gallus gallus
 RARSENSG00000113643Homo sapiens
 RarsENSMUSG00000018848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rars2 / arginyl-tRNA synthetase 2, mitochondrial (putative) / Q3U186* / Q5T160* / arginyl-tRNA synthetase 2, mitochondrial* / Probable arginine--tRNA ligase, mitochondrial *ENSDARG0000003227723


Protein motifs (from Interpro)
Interpro ID Name
 IPR001278  Arginine-tRNA ligase
 IPR001412  Aminoacyl-tRNA synthetase, class I, conserved site
 IPR005148  Arginyl tRNA synthetase N-terminal domain
 IPR008909  DALR anticodon binding
 IPR009080  Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR035684  Arginyl-tRNA synthetase, catalytic core domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006420 arginyl-tRNA aminoacylation IBA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004814 arginine-tRNA ligase activity IBA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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