ENSG00000113643


Homo sapiens

Features
Gene ID: ENSG00000113643
  
Biological name :RARS
  
Synonyms : arginyl-tRNA synthetase / P54136 / RARS
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q34
Gene start: 168486445
Gene end: 168519299
  
Corresponding Affymetrix probe sets: 201330_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428494
Ensembl peptide - ENSP00000486284
Ensembl peptide - ENSP00000430035
Ensembl peptide - ENSP00000429030
Ensembl peptide - ENSP00000231572
NCBI entrez gene - 5917     See in Manteia.
OMIM - 107820
RefSeq - NM_002887
RefSeq Peptide - NP_002878
swissprot - E5RJM9
swissprot - E5RI24
swissprot - E5RH09
swissprot - P54136
Ensembl - ENSG00000113643
  
Related genetic diseases (OMIM): 616140 - Leukodystrophy, hypomyelinating, 9, 616140
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rarsENSDARG00000054530Danio rerio
 RARSENSGALG00000001850Gallus gallus
 RarsENSMUSG00000018848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RARS2 / Q5T160 / arginyl-tRNA synthetase 2, mitochondrialENSG0000014628224


Protein motifs (from Interpro)
Interpro ID Name
 IPR001278  Arginine-tRNA ligase
 IPR001412  Aminoacyl-tRNA synthetase, class I, conserved site
 IPR005148  Arginyl tRNA synthetase N-terminal domain
 IPR008909  DALR anticodon binding
 IPR009080  Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR035684  Arginyl-tRNA synthetase, catalytic core domain
 IPR036695  Arginyl tRNA synthetase N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006418 tRNA aminoacylation for protein translation TAS
 biological_processGO:0006420 arginyl-tRNA aminoacylation IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0017101 aminoacyl-tRNA synthetase multienzyme complex IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004814 arginine-tRNA ligase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0034618 arginine binding IEA
 molecular_functionGO:0045296 cadherin binding IDA


Pathways (from Reactome)
Pathway description
SeMet incorporation into proteins
Cytosolic tRNA aminoacylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000817 Poor eye contact 
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 HP:0001249 Mental retardation 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002013 Vomiting 
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 HP:0002061 Lower limb spasticity 
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 HP:0002071 Extrapyramidal signs 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002355 Difficulty walking 
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 HP:0002415 Leukodystrophy 
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 HP:0002421 Poor head control 
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 HP:0002506 Diffuse cerebral atrophy 
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 HP:0003828 Variable expressivity 
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 HP:0006808 Hypomyelination of the brain 
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 HP:0006895 Lower limb hypertonia 
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 HP:0007024 Pseudobulbar paralysis "Bilateral impairment of the function of the cranial nerves 9-12, which control musculature involved in eating, swallowing, and speech. Pseudobulbar paralysis is characterized clinically by dysarthria, dysphonia, and dysphagia with bifacial paralysis, and may be accompanied by `Pseudobulbar behavioral symptoms` (HP:0002193) such as enforced crying and laughing." [HPO:sdoelken]
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 HP:0007153 Progressive extrapyramidal movement disorder 
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 HP:0007179 Poor or absent smooth pursuit 
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 HP:0007281 Developmental arrest 
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 HP:0009062 Hypotonia, axial, in infancy "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk and with onset in infancy." [HPO:curators]
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 HP:0030890 Hyperintensity of cerebral white matter on MRI "A brighter than expected signal on magnetic resonance imaging emanating from the cerebral white matter." [PMID:15576652]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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