ENSG00000146282


Homo sapiens

Features
Gene ID: ENSG00000146282
  
Biological name :RARS2
  
Synonyms : arginyl-tRNA synthetase 2, mitochondrial / Q5T160 / RARS2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q15
Gene start: 87514378
Gene end: 87590003
  
Corresponding Affymetrix probe sets: 1561048_at (Human Genome U133 Plus 2.0 Array)   207472_at (Human Genome U133 Plus 2.0 Array)   225264_at (Human Genome U133 Plus 2.0 Array)   232901_at (Human Genome U133 Plus 2.0 Array)   232902_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358549
Ensembl peptide - ENSP00000389656
NCBI entrez gene - 57038     See in Manteia.
OMIM - 611524
RefSeq - XM_017011081
RefSeq - NM_001318785
RefSeq - NM_020320
RefSeq - XM_017011077
RefSeq - XM_017011078
RefSeq - XM_017011079
RefSeq - XM_017011080
RefSeq - XM_011535948
RefSeq - XM_011535949
RefSeq - XM_017011072
RefSeq - XM_017011073
RefSeq - XM_017011074
RefSeq - XM_017011075
RefSeq - XM_017011076
RefSeq Peptide - NP_001305714
RefSeq Peptide - NP_064716
swissprot - Q5T160
swissprot - H0Y450
Ensembl - ENSG00000146282
  
Related genetic diseases (OMIM): 611523 - Pontocerebellar hypoplasia, type 6, 611523
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rars2ENSDARG00000032277Danio rerio
 RARS2ENSGALG00000015806Gallus gallus
 Rars2ENSMUSG00000028292Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RARS / P54136 / arginyl-tRNA synthetaseENSG0000011364328


Protein motifs (from Interpro)
Interpro ID Name
 IPR001278  Arginine-tRNA ligase
 IPR001412  Aminoacyl-tRNA synthetase, class I, conserved site
 IPR008909  DALR anticodon binding
 IPR009080  Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR035684  Arginyl-tRNA synthetase, catalytic core domain
 IPR036695  Arginyl tRNA synthetase N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006420 arginyl-tRNA aminoacylation IEA
 biological_processGO:0032543 mitochondrial translation IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004814 arginine-tRNA ligase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
Mitochondrial tRNA aminoacylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000189 Narrow palate "Width of the palate more than 2 SD below the mean (objective) or apparently decreased palatal width (subjective)." [pmid:19125428]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000490 Deep set eyes 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001344 Absent speech development 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0002033 Poor suck "An inadequate sucking reflex, resulting in the difficult of newborns to be breast-fed." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002061 Lower limb spasticity 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002421 Poor head control 
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 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0003676 Progressive disorder 
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 HP:0003819 Death in childhood 
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 HP:0003828 Variable expressivity 
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 HP:0006986 Upper limb spasticity 
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 HP:0007366 Atrophy/Degeneration affecting the brainstem 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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