ENSDARG00000054578


Danio rerio

Features
Gene ID: ENSDARG00000054578
  
Biological name :arl6ip1
  
Synonyms : ADP-ribosylation factor-like 6 interacting protein 1 / arl6ip1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 31104891
Gene end: 31115996
  
Corresponding Affymetrix probe sets: Dr.1214.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120401
Ensembl peptide - ENSDARP00000058954
NCBI entrez gene - 394087     See in Manteia.
RefSeq - NM_201112
RefSeq Peptide - NP_957406
swissprot - E9QGB6
swissprot - Q7ZWB4
ZFIN ID - ZDB-GENE-040426-1087
Ensembl - ENSDARG00000054578
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARL6IP1ENSGALG00000006780Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rps15a / ribosomal protein S15a / P62244* / P62245* / 40S ribosomal protein S15a *ENSDARG000000101609


Protein motifs (from Interpro)
Interpro ID Name
 IPR033301  ADP-ribosylation factor-like protein 6-interacting protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001755 neural crest cell migration IMP
 biological_processGO:0006613 cotranslational protein targeting to membrane IBA
 biological_processGO:0014032 neural crest cell development IMP
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 cellular_componentGO:0005784 Sec61 translocon complex IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain morphology , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle decreased size , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000076 swim bladder swim bladder morphology , abnormal
Show

 ZFA:0000106 extension extension decreased length , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
eye morphology , abnormal
Show

 ZFA:0000112 gut gut morphology , abnormal
Show

 ZFA:0000152 retina retina morphology , abnormal
retina mitotic cell cycle process quality , abnormal
retina apoptotic process decreased process quality , abnormal
retina cell proliferation process quality , abnormal
retina has fewer parts of type cell , abnormal
retina exit from mitosis decreased process quality , abnormal
retina decreased size , abnormal
retina axon malformed , abnormal
Show

 ZFA:0000200 dorsal root ganglion dorsal root ganglion neuron decreased amount , abnormal
Show

 ZFA:0000445 optic tectum optic tectum morphology , abnormal
Show

 ZFA:0000818 vagal neural crest vagal neural crest decreased size , abnormal
Show

 ZFA:0001114 head head flat , abnormal
head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk deformed , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
post-vent region curved , abnormal
post-vent region curved dorsal , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin morphology , abnormal
pectoral fin absent , abnormal
Show

 ZFA:0001194 cranial neural crest cranial neural crest decreased size , abnormal
Show

 ZFA:0001202 optic cup optic cup decreased size , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
Show

 ZFA:0001321 neurocranial trabecula neurocranial trabecula decreased size , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage absent , abnormal
Show

 ZFA:0001430 pneumatic duct pneumatic duct morphology , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage absent , abnormal
Show

 ZFA:0001462 somite border somite border irregular spatial pattern , abnormal
Show

 ZFA:0001555 epibranchial ganglion epibranchial ganglion neuron decreased amount , abnormal
Show

 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 morphology , abnormal
Show

 ZFA:0001679 solid lens vesicle solid lens vesicle decreased size , abnormal
Show

 ZFA:0005775 enteric neuron enteric neuron decreased length , abnormal
enteric neuron mislocalised , abnormal
enteric neuron decreased amount , abnormal
Show

 ZFA:0009003 cranial neural crest cell cranial neural crest cell mislocalised , abnormal
Show

 ZFA:0009004 trunk neural crest cell trunk neural crest cell mislocalised , abnormal
Show

 ZFA:0009052 motor neuron motor neuron axon branched , abnormal
Show

 ZFA:0009090 pigment cell pigment cell irregular spatial pattern , abnormal
Show

 ZFA:0009091 melanocyte melanocyte decreased amount , abnormal
Show

 ZFA:0009165 neural crest cell neural crest cell decreased amount , abnormal
Show

 ZFA:0009199 iridophore iridophore decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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