ENSDARG00000054980


Danio rerio

Features
Gene ID: ENSDARG00000054980
  
Biological name :ebna1bp2
  
Synonyms : EBNA1 binding protein 2 / ebna1bp2
  
Possible biological names infered from orthology : Probable rRNA-processing protein EBP2 / Q99848 / Q9D903
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 13694450
Gene end: 13721149
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000151663
Ensembl peptide - ENSDARP00000071726
Ensembl peptide - ENSDARP00000129654
NCBI entrez gene - 335049     See in Manteia.
swissprot - Q6DRD0
swissprot - X1WHE2
ZFIN ID - ZDB-GENE-030131-6989
Ensembl - ENSDARG00000054980
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EBNA1BP2ENSGALG00000009045Gallus gallus
 Q99848ENSG00000117395Homo sapiens
 Q9D903ENSMUSG00000028729Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008610  Eukaryotic rRNA processing


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006364 rRNA processing IBA
 biological_processGO:0042273 ribosomal large subunit biogenesis IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0030687 preribosome, large subunit precursor IBA
 cellular_componentGO:0034399 nuclear periphery IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
Show

 ZFA:0000029 hindbrain hindbrain quality , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
yolk grey , abnormal
yolk quality , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism decreased pigmentation , abnormal
whole organism shape , abnormal
Show

 ZFA:0001114 head head necrotic , abnormal
head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk atrophied , abnormal
Show

 ZFA:0009090 pigment cell pigment cell quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000018902 pes / P79741 / pescadillo / PES1* / O00541* / Q9EQ61* / Pescadillo homolog * / pescadillo ribosomal biogenesis factor 1*  / complex






 

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