ENSDARG00000055154


Danio rerio

Features
Gene ID: ENSDARG00000055154
  
Biological name :slc8a4a
  
Synonyms : slc8a4a / solute carrier family 8 (sodium/calcium exchanger), member 4a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 27047333
Gene end: 27185915
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115491
Ensembl peptide - ENSDARP00000071945
NCBI entrez gene - 568512     See in Manteia.
RefSeq - NM_001089419
RefSeq - XM_009295486
RefSeq Peptide - NP_001082888
swissprot - A4UQV6
ZFIN ID - ZDB-GENE-060110-2
Ensembl - ENSDARG00000055154
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc8a4b / solute carrier family 8 (sodium/calcium exchanger), member 4bENSDARG0000003714580
slc8a1b / solute carrier family 8 (sodium/calcium exchanger), member 1b / SLC8A1* / P32418* / solute carrier family 8 member A1* / solute carrier family 8 (sodium/calcium exchanger), member 1*ENSDARG0000004340667
slc8a1a / solute carrier family 8 (sodium/calcium exchanger), member 1a / SLC8A1* / P32418* / solute carrier family 8 member A1* / solute carrier family 8 (sodium/calcium exchanger), member 1*ENSDARG0000001342266
slc8a3 / solute carrier family 8 (sodium/calcium exchanger), member 3 / P57103* / S4R2P9* / solute carrier family 8 member A3*ENSDARG0000000493165
slc8a2b / solute carrier family 8 (sodium/calcium exchanger), member 2b / Q9UPR5* / SLC8A2* / Q8K596* / solute carrier family 8 member A2* / solute carrier family 8 (sodium/calcium exchange...ENSDARG0000010059262
slc8a2a / solute carrier family 8 (sodium/calcium exchanger), member 2a / Q9UPR5* / SLC8A2* / Q8K596* / solute carrier family 8 member A2* / solute carrier family 8 (sodium/calcium exchange...ENSDARG0000000891258
adgrv1 / adhesion G protein-coupled receptor V1 / Q8VHN7* / Q8WXG9*ENSDARG0000002113726


Protein motifs (from Interpro)
Interpro ID Name
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR004836  Sodium/calcium exchanger protein
 IPR004837  Sodium/calcium exchanger membrane region
 IPR032452  Sodium/calcium exchanger domain, C-terminal extension


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0006816 calcium ion transport IEA
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0007519 skeletal muscle tissue development IMP
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0042044 fluid transport IMP
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IMP
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060047 heart contraction IMP
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005432 calcium:sodium antiporter activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium movement quality , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000112 gut gut mislocalised , abnormal
Show

 ZFA:0000114 heart heart mislocalised , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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