ENSDARG00000055585


Danio rerio

Features
Gene ID: ENSDARG00000055585
  
Biological name :c1galt1a
  
Synonyms : c1galt1a / core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 28092083
Gene end: 28136739
  
Corresponding Affymetrix probe sets: Dr.7931.1.A1_at (Zebrafish Array)   NM_001077374_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134314
Ensembl peptide - ENSDARP00000148771
Ensembl peptide - ENSDARP00000053957
Ensembl peptide - ENSDARP00000116354
NCBI entrez gene - 557675     See in Manteia.
RefSeq - NM_001077374
RefSeq Peptide - NP_001070842
swissprot - E9QBT0
swissprot - F1QGX4
ZFIN ID - ZDB-GENE-061013-303
Ensembl - ENSDARG00000055585
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
c1galt1b / core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1bENSDARG0000005556160
C1GALT1 (1 of many) / core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 / Q9NS00* / C1GALT1*ENSDARG0000009909839
si:dkey-202e17.1 / C1GALT1 (1 of many) / Q9JJ06* / Q9NS00* / C1GALT1* / Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 * / core 1 synthase, glycoprotein-N-acetylgalactosa...ENSDARG0000006227836
c1galt1c1 / C1GALT1-specific chaperone 1 / P0DN25* / Q96EU7* / Q9JMG2* / C1GALT1C1L* / C1GALT1-specific chaperone 1 like*ENSDARG0000003633519
b3glcta / beta 3-glucosyltransferase a / Q8BHT6* / Q6Y288* / B3GLCT* / beta 3-glucosyltransferase* / Beta-1,3-glucosyltransferase *ENSDARG0000007391715
b3glctb / beta 3-glucosyltransferase b / Q8BHT6* / Q6Y288* / B3GLCT* / beta 3-glucosyltransferase* / Beta-1,3-glucosyltransferase *ENSDARG0000007774015


Protein motifs (from Interpro)
Interpro ID Name
 IPR003378  Fringe-like
 IPR026842  Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016266 O-glycan processing IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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