ENSDARG00000055752


Danio rerio

Features
Gene ID: ENSDARG00000055752
  
Biological name :npas4a
  
Synonyms : neuronal PAS domain protein 4a / npas4a / Q1ECW2
  
Possible biological names infered from orthology : Neuronal PAS domain-containing protein 4 / neuronal PAS domain protein 4 / NPAS4 / Q8BGD7 / Q8IUM7
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 30636955
Gene end: 30642819
  
Corresponding Affymetrix probe sets: Dr.20524.1.A1_at (Zebrafish Array)   NM_001045321_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000072616
NCBI entrez gene - 724016     See in Manteia.
RefSeq - NM_001045321
RefSeq Peptide - NP_001038786
swissprot - Q1ECW2
ZFIN ID - ZDB-GENE-060616-396
Ensembl - ENSDARG00000055752
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NPAS4ENSG00000174576Homo sapiens
 Npas4ENSMUSG00000045903Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CR388166.1 / NPAS4* / Q8BGD7* / Q8IUM7* / neuronal PAS domain protein 4* / Neuronal PAS domain-containing protein 4 *ENSDARG0000008775333
CABZ01080135.1ENSDARG0000011651119


Protein motifs (from Interpro)
Interpro ID Name
 IPR000014  PAS domain
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR013655  PAS fold-3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IGI
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007612 learning ISS
 biological_processGO:0007614 short-term memory ISS
 biological_processGO:0007616 long-term memory ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030900 forebrain development IMP
 biological_processGO:0032228 regulation of synaptic transmission, GABAergic ISS
 biological_processGO:0035176 social behavior ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0048167 regulation of synaptic plasticity ISS
 biological_processGO:0060079 excitatory postsynaptic potential ISS
 biological_processGO:0060080 inhibitory postsynaptic potential ISS
 biological_processGO:1904862 inhibitory synapse assembly ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0098794 postsynapse IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding ISS
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain apoptotic process increased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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