ENSDARG00000055996


Danio rerio

Features
Gene ID: ENSDARG00000055996
  
Biological name :rps8a
  
Synonyms : P62247 / ribosomal protein S8a / rps8a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 26498446
Gene end: 26501868
  
Corresponding Affymetrix probe sets: Dr.3131.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000072874
NCBI entrez gene - 407690     See in Manteia.
swissprot - P62247
ZFIN ID - ZDB-GENE-030131-8626
Ensembl - ENSDARG00000055996
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rps8b / ribosomal protein S8b / RPS8* / P62241* / P62242* / ribosomal protein S8*ENSDARG0000005736891


Protein motifs (from Interpro)
Interpro ID Name
 IPR001047  Ribosomal protein S8e
 IPR018283  Ribosomal protein S8e, conserved site
 IPR022309  Ribosomal protein S8e/ribosomal biogenesis NSA2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0043009 chordate embryonic development IMP
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball increased size , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
midbrain hindbrain boundary aplastic , abnormal
Show

 ZFA:0000079 telencephalon telencephalon morphology , abnormal
Show

 ZFA:0000100 cerebellum cerebellum aplastic , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000108 fin fin aplastic , abnormal
Show

 ZFA:0000109 forebrain forebrain protruding , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
fourth ventricle increased size , abnormal
fourth ventricle opaque , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
Show

 ZFA:0000135 notochord notochord bent , abnormal
Show

 ZFA:0000138 otic placode otic placode decreased size , abnormal
Show

 ZFA:0000142 peripheral nervous system peripheral nervous system nerve neoplastic , abnormal
peripheral nervous system chromosome amount , abnormal
Show

 ZFA:0000152 retina retina decreased size , abnormal
Show

 ZFA:0000160 tegmentum tegmentum opaque , abnormal
Show

 ZFA:0000445 optic tectum optic tectum increased size , abnormal
optic tectum opaque , abnormal
Show

 ZFA:0001094 whole organism whole organism quality , abnormal
whole organism decreased size , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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