ENSDARG00000057368


Danio rerio

Features
Gene ID: ENSDARG00000057368
  
Biological name :rps8b
  
Synonyms : ribosomal protein S8b / rps8b
  
Possible biological names infered from orthology : P62241 / P62242 / ribosomal protein S8 / RPS8
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 18193116
Gene end: 18200003
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000074464
NCBI entrez gene - 100000836     See in Manteia.
swissprot - B5DDE8
ZFIN ID - ZDB-GENE-050522-202
Ensembl - ENSDARG00000057368
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS8ENSGALG00000010124Gallus gallus
 RPS8ENSG00000142937Homo sapiens
 Rps8ENSMUSG00000047675Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rps8a / P62247 / ribosomal protein S8aENSDARG0000005599691


Protein motifs (from Interpro)
Interpro ID Name
 IPR001047  Ribosomal protein S8e
 IPR018283  Ribosomal protein S8e, conserved site
 IPR022309  Ribosomal protein S8e/ribosomal biogenesis NSA2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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