ENSMUSG00000047675


Mus musculus

Features
Gene ID: ENSMUSG00000047675
  
Biological name :Rps8
  
Synonyms : P62242 / ribosomal protein S8 / Rps8
  
Possible biological names infered from orthology : P62241
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: D1
Gene start: 117153827
Gene end: 117156243
  
Corresponding Affymetrix probe sets: 10369206 (MoGene1.0st)   10404262 (MoGene1.0st)   10479174 (MoGene1.0st)   10479187 (MoGene1.0st)   10479215 (MoGene1.0st)   10490256 (MoGene1.0st)   10515416 (MoGene1.0st)   10515423 (MoGene1.0st)   10515425 (MoGene1.0st)   10515427 (MoGene1.0st)   10560103 (MoGene1.0st)   10565582 (MoGene1.0st)   1436760_a_at (Mouse Genome 430 2.0 Array)   1437610_x_at (Mouse Genome 430 2.0 Array)   1455319_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000099757
NCBI entrez gene - 100040298     See in Manteia.
NCBI entrez gene - 20116     See in Manteia.
MGI - MGI:98166
RefSeq - NM_009098
RefSeq Peptide - NP_001345016
RefSeq Peptide - NP_033124
swissprot - P62242
swissprot - Q497E9
Ensembl - ENSMUSG00000047675
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps8bENSDARG00000057368Danio rerio
 RPS8ENSGALG00000010124Gallus gallus
 RPS8ENSG00000142937Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001047  Ribosomal protein S8e
 IPR018283  Ribosomal protein S8e, conserved site
 IPR022309  Ribosomal protein S8e/ribosomal biogenesis NSA2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr