ENSDARG00000056717


Danio rerio

Features
Gene ID: ENSDARG00000056717
  
Biological name :vars2
  
Synonyms : valyl-tRNA synthetase 2, mitochondrial (putative) / vars2
  
Possible biological names infered from orthology : Q3U2A8 / Q5ST30 / valyl-tRNA synthetase 2, mitochondrial
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 27399168
Gene end: 27448606
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000073707
Ensembl peptide - ENSDARP00000144410
NCBI entrez gene - 100170827     See in Manteia.
RefSeq - NM_001130661
RefSeq Peptide - NP_001124133
swissprot - F1QSW0
ZFIN ID - ZDB-GENE-060503-575
Ensembl - ENSDARG00000056717
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VARS2ENSG00000137411Homo sapiens
 Vars2ENSMUSG00000038838Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vars / valyl-tRNA synthetase / P26640* / Q9Z1Q9*ENSDARG0000004457546


Protein motifs (from Interpro)
Interpro ID Name
 IPR001412  Aminoacyl-tRNA synthetase, class I, conserved site
 IPR002300  Aminoacyl-tRNA synthetase, class Ia
 IPR002303  Valine-tRNA ligase
 IPR009008  Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain
 IPR009080  Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
 IPR013155  Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR019499  Valyl-tRNA synthetase, tRNA-binding arm
 IPR033705  Valyl tRNA synthetase, anticodon-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006438 valyl-tRNA aminoacylation IEA
 biological_processGO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0002161 aminoacyl-tRNA editing activity IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004832 valine-tRNA ligase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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