ENSDARG00000056924


Danio rerio

Features
Gene ID: ENSDARG00000056924
  
Biological name :sap130a
  
Synonyms : sap130a / Sin3A-associated protein a
  
Possible biological names infered from orthology : Mus musculus Sin3A associated protein (Sap130), transcript variant 2, mRNA. / Q9H0E3 / SAP130 / Sin3A associated protein 130
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 28018390
Gene end: 28049817
  
Corresponding Affymetrix probe sets: Dr.12476.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112480
Ensembl peptide - ENSDARP00000125842
NCBI entrez gene - 100073341     See in Manteia.
RefSeq - NM_001098777
RefSeq - XM_005165896
RefSeq - XM_009302388
RefSeq Peptide - NP_001092247
swissprot - I3ISG2
swissprot - F1REK0
ZFIN ID - ZDB-GENE-070615-5
Ensembl - ENSDARG00000056924
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SAP130ENSGALG00000002070Gallus gallus
 Q9H0E3ENSG00000136715Homo sapiens
 Sap130ENSMUSG00000024260Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sap130b / Sin3A-associated protein b / SAP130* / Q9H0E3* / Sin3A associated protein 130* / Mus musculus Sin3A associated protein (Sap130), transcript variant 2, mRNA.*ENSDARG0000007935263


Protein motifs (from Interpro)
Interpro ID Name
 IPR024137  Histone deacetylase complex subunit SAP130
 IPR031963  Histone deacetylase complex subunit SAP130, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001966 thigmotaxis IGI
 biological_processGO:0003231 cardiac ventricle development IMP
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008345 larval locomotory behavior IGI
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0021508 floor plate formation IGI
 cellular_componentGO:0070822 Sin3-type complex IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle decreased size , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000114 heart heart decreased size , abnormal
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 ZFA:0009316 cardiac muscle cell cardiac muscle cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr