ENSDARG00000057626


Danio rerio

Features
Gene ID: ENSDARG00000057626
  
Biological name :josd2
  
Synonyms : josd2 / Josephin domain containing 2
  
Possible biological names infered from orthology : Josephin-2 / Q8TAC2 / Q9CR30
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 13683807
Gene end: 13706770
  
Corresponding Affymetrix probe sets: Dr.11491.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000153638
Ensembl peptide - ENSDARP00000074792
Ensembl peptide - ENSDARP00000116701
Ensembl peptide - ENSDARP00000118650
NCBI entrez gene - 393120     See in Manteia.
RefSeq - NM_200151
RefSeq Peptide - NP_956445
swissprot - F1QCJ5
ZFIN ID - ZDB-GENE-040426-850
Ensembl - ENSDARG00000057626
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 JOSD2ENSG00000161677Homo sapiens
 Josd2ENSMUSG00000038695Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
josd1 / Josephin domain containing 1 / Q15040* / Q9DBJ6* / Josephin-1 *ENSDARG0000007154852


Protein motifs (from Interpro)
Interpro ID Name
 IPR006155  Josephin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016579 protein deubiquitination IBA
 biological_processGO:0021551 central nervous system morphogenesis IMP
 biological_processGO:1904888 cranial skeletal system development IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Josephin domain DUBs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000135 notochord notochord malformed , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0000445 optic tectum optic tectum increased size , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
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 ZFA:0001114 head head malformed , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
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 ZFA:0001205 Meckel s cartilage Meckels cartilage morphology , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
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 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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