ENSDARG00000071548


Danio rerio

Features
Gene ID: ENSDARG00000071548
  
Biological name :josd1
  
Synonyms : josd1 / Josephin domain containing 1
  
Possible biological names infered from orthology : Josephin-1 / Q15040 / Q9DBJ6
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 18906407
Gene end: 18915531
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000096632
Ensembl peptide - ENSDARP00000152754
NCBI entrez gene - 767655     See in Manteia.
swissprot - Q08C38
ZFIN ID - ZDB-GENE-060929-260
Ensembl - ENSDARG00000071548
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 JOSD1ENSGALG00000041766Gallus gallus
 JOSD1ENSG00000100221Homo sapiens
 Josd1ENSMUSG00000022426Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
josd2 / Josephin domain containing 2 / Q8TAC2* / Q9CR30* / Josephin-2 *ENSDARG0000005762640


Protein motifs (from Interpro)
Interpro ID Name
 IPR006155  Josephin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016579 protein deubiquitination IBA
 biological_processGO:1904888 cranial skeletal system development IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Josephin domain DUBs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000022 floor plate floor plate deformed , abnormal
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 ZFA:0000084 yolk yolk deformed , abnormal
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 ZFA:0000107 eye eye malformed , abnormal
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 ZFA:0000135 notochord notochord malformed , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk necrotic , abnormal
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 ZFA:0001117 post-vent region post-vent region necrotic , abnormal
post-vent region curled , abnormal
post-vent region hemorrhagic , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage absent , abnormal
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 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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