ENSDARG00000057649


Danio rerio

Features
Gene ID: ENSDARG00000057649
  
Biological name :satb1a
  
Synonyms : satb1a / SATB homeobox 1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 20453831
Gene end: 20482261
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000056204
NCBI entrez gene - 378993     See in Manteia.
RefSeq - NM_001080162
RefSeq Peptide - NP_001073631
swissprot - Q1LUN2
ZFIN ID - ZDB-GENE-031010-36
Ensembl - ENSDARG00000057649
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
satb1b / SATB homeobox 1b / SATB1* / Q60611* / Q01826* / SATB homeobox 1* / Mus musculus special AT-rich sequence binding protein 1 (Satb1), transcript variant 5, mRNA.*ENSDARG0000006262144
satb2 / SATB homeobox 2 / Q8VI24* / Q9UPW6* / special AT-rich sequence binding protein 2*ENSDARG0000006188543


Protein motifs (from Interpro)
Interpro ID Name
 IPR003350  CUT domain
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR032355  SATB, CUT1-like DNA-binding domain
 IPR032392  SATB, ubiquitin-like oligomerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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