ENSDARG00000061885


Danio rerio

Features
Gene ID: ENSDARG00000061885
  
Biological name :satb2
  
Synonyms : satb2 / SATB homeobox 2
  
Possible biological names infered from orthology : Q8VI24 / Q9UPW6 / special AT-rich sequence binding protein 2
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 32560399
Gene end: 32604414
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000083309
Ensembl peptide - ENSDARP00000141418
NCBI entrez gene - 563435     See in Manteia.
RefSeq - NM_001128532
RefSeq Peptide - NP_001122004
swissprot - E1ANH4
swissprot - A8WIP9
swissprot - A0A0R4IX56
ZFIN ID - ZDB-GENE-070912-212
Ensembl - ENSDARG00000061885
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SATB2ENSGALG00000008135Gallus gallus
 SATB2ENSG00000119042Homo sapiens
 Satb2ENSMUSG00000038331Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
satb1b / SATB homeobox 1b / SATB1* / Q60611* / Q01826* / SATB homeobox 1* / Mus musculus special AT-rich sequence binding protein 1 (Satb1), transcript variant 5, mRNA.*ENSDARG0000006262146
satb1a / SATB homeobox 1aENSDARG0000005764937


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR032355  SATB, CUT1-like DNA-binding domain
 IPR032392  SATB, ubiquitin-like oligomerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
SUMOylation of chromatin organization proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000309 E-YSL E-YSL immature , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism actin filament disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000028119 Q6NV25 / sumo3a / small ubiquitin-like modifier 3a / SUMO3* / Q9Z172* / P55854* / small ubiquitin-like modifier 3*  / reaction
 ENSDARG00000052649 Q9DDJ0 / ube2ia / ubiquitin-conjugating enzyme E2Ia / UBE2I* / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000007438 ube2ib / Q9W6H5 / ubiquitin-conjugating enzyme E2Ib / UBE2I* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000035993 sumo3b / small ubiquitin-like modifier 3b / SUMO3* / P55854* / small ubiquitin-like modifier 3*  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr