ENSGALG00000008135


Gallus gallus

Features
Gene ID: ENSGALG00000008135
  
Biological name :SATB2
  
Synonyms : SATB2 / SATB homeobox 2
  
Possible biological names infered from orthology : Q8VI24 / Q9UPW6 / special AT-rich sequence binding protein 2
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 10831148
Gene end: 10961410
  
Corresponding Affymetrix probe sets: GgaAffx.5095.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043071
Ensembl peptide - ENSGALP00000013186
NCBI entrez gene - 424063     See in Manteia.
RefSeq - XM_015289413
RefSeq - NM_001199110
RefSeq - XM_015289411
RefSeq - XM_015289412
RefSeq - XM_015289410
RefSeq Peptide - NP_001186039
swissprot - E1BZL3
Ensembl - ENSGALG00000008135
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 satb2ENSDARG00000061885Danio rerio
 SATB2ENSG00000119042Homo sapiens
 Satb2ENSMUSG00000038331Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SATB1 / SATB homeobox 1 / Q01826* / Q60611* / Mus musculus special AT-rich sequence binding protein 1 (Satb1), transcript variant 5, mRNA.*ENSGALG0000001125462


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR032355  SATB, CUT1-like DNA-binding domain
 IPR032392  SATB, ubiquitin-like oligomerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0002076 osteoblast development IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0009880 embryonic pattern specification IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0021902 commitment of neuronal cell to specific neuron type in forebrain IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0060021 roof of mouth development IEA
 biological_processGO:0071310 cellular response to organic substance IEA
 cellular_componentGO:0000118 histone deacetylase complex IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of chromatin organization proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000006428 UBE2I / P63283 / SUMO-conjugating enzyme UBC9 / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction






 

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