ENSGALG00000011254


Gallus gallus

Features
Gene ID: ENSGALG00000011254
  
Biological name :SATB1
  
Synonyms : SATB1 / SATB homeobox 1
  
Possible biological names infered from orthology : Mus musculus special AT-rich sequence binding protein 1 (Satb1), transcript variant 5, mRNA. / Q01826 / Q60611
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 35245698
Gene end: 35334420
  
Corresponding Affymetrix probe sets: Gga.11417.1.S1_at (Chicken Array)   GgaAffx.23503.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000041108
Ensembl peptide - ENSGALP00000056821
Ensembl peptide - ENSGALP00000018340
NCBI entrez gene - 420647     See in Manteia.
RefSeq - XM_015281489
RefSeq - XM_015281485
RefSeq - XM_015281486
RefSeq - XM_015281487
RefSeq - XM_015281488
RefSeq - NM_001199644
RefSeq Peptide - NP_001186573
swissprot - E1BRH4
swissprot - A0A1D5PV61
swissprot - R4GGE1
Ensembl - ENSGALG00000011254
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 satb1bENSDARG00000062621Danio rerio
 SATB1ENSG00000182568Homo sapiens
 Satb1ENSMUSG00000023927Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SATB2 / SATB homeobox 2 / Q8VI24* / Q9UPW6* / special AT-rich sequence binding protein 2*ENSGALG0000000813560


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR032355  SATB, CUT1-like DNA-binding domain
 IPR032392  SATB, ubiquitin-like oligomerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0008544 epidermis development IEA
 biological_processGO:0016571 histone methylation IEA
 biological_processGO:0042110 T cell activation IEA
 biological_processGO:0043367 CD4-positive, alpha-beta T cell differentiation IEA
 biological_processGO:0043374 CD8-positive, alpha-beta T cell differentiation IEA
 biological_processGO:0050798 activated T cell proliferation IEA
 biological_processGO:0060004 reflex IEA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005720 nuclear heterochromatin IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0016605 PML body IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
Apoptotic cleavage of cellular proteins
SUMOylation of chromatin organization proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000008435 SUMO1 / Q8QGH2 / Small ubiquitin-related modifier 1 / P63166* / P63165* / small ubiquitin-like modifier 1*  / reaction / complex
 ENSGALG00000006428 UBE2I / P63283 / SUMO-conjugating enzyme UBC9 / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSGALG00000007971 SUMO2 / Q5ZJM9 / Small ubiquitin-related modifier 2 / SUMO4* / Q6EEV6* / P61957* / P61956* / small ubiquitin-like modifier 2* / small ubiquitin-like modifier 4*  / reaction






 

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