ENSDARG00000058203
Danio rerio | |
Features
| Gene ID: | ENSDARG00000058203 | | | | | Biological name : | smc1al | | | | | Synonyms : | smc1al / structural maintenance of chromosomes 1A, like | | | | | Possible biological names infered from orthology : | Q14683 / Q9CU62 / SMC1A / structural maintenance of chromosomes 1A | | | | | Species: | Danio rerio | | | | | Chr. number: | 23 | | Strand: | 1 | | Band: | | | Gene start: | 12840080 | | Gene end: | 12897815 | | | | | Corresponding Affymetrix probe sets: | Dr.20020.1.S1_at (Zebrafish Array) Dr.20020.2.S1_at (Zebrafish Array) Dr.24771.1.A1_at (Zebrafish Array) Dr.25173.1.S1_at (Zebrafish Array) Dr.4407.1.A1_at (Zebrafish Array) NM_212810_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000075459
Ensembl peptide - ENSDARP00000105036
Ensembl peptide - ENSDARP00000150758
NCBI entrez gene - 403060
See in Manteia.
RefSeq - NM_212810
RefSeq Peptide - NP_997975
swissprot - Q6DRM9
swissprot - Q6NYA8
ZFIN ID - ZDB-GENE-040426-57
Ensembl - ENSDARG00000058203
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
Protein motifs (from Interpro)
| IPR003395 | RecF/RecN/SMC, N-terminal | | IPR010935 | SMCs flexible hinge | | IPR024704 | Structural maintenance of chromosomes protein | | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | | IPR029683 | Structural maintenance of chromosomes protein 1A, metazoan |
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000008 | brain | brain necrotic , abnormal |
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| | ZFA:0000012 | central nervous system | central nervous system necrotic , abnormal |
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| | ZFA:0000084 | yolk | yolk circular , abnormal
yolk dark grey , abnormal
yolk low brightness , abnormal |
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| | ZFA:0000107 | eye | eye decreased size , abnormal
eye decreased size , ameliorated |
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| | ZFA:0001094 | whole organism | whole organism decreased length , abnormal
whole organism viability , abnormal
whole organism necrotic , abnormal
whole organism lethal (sensu genetics) , abnormal |
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| | ZFA:0001114 | head | head decreased size , abnormal
head decreased size , ameliorated |
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| | ZFA:0001115 | trunk | trunk decreased length , ameliorated
trunk necrotic , abnormal
trunk curved dorsal , abnormal |
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| | ZFA:0001117 | post-vent region | post-vent region curved , abnormal
post-vent region curved , ameliorated |
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| | ZFA:0001458 | cranial cartilage | cranial cartilage cartilage development disrupted , abnormal
cranial cartilage cartilage development decreased process quality , ameliorated |
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Interacting proteins (from Reactome)
No match
1 s.
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