ENSDARG00000059902


Danio rerio

Features
Gene ID: ENSDARG00000059902
  
Biological name :vps16
  
Synonyms : vacuolar protein sorting protein 16 / vps16
  
Possible biological names infered from orthology : Q9H269 / VPS16, CORVET/HOPS core subunit / VSP16 CORVET/HOPS core subunit
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 9107063
Gene end: 9130843
  
Corresponding Affymetrix probe sets: Dr.3226.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000078255
NCBI entrez gene - 798985     See in Manteia.
RefSeq - NM_001098189
RefSeq Peptide - NP_001091659
swissprot - A5D6T0
ZFIN ID - ZDB-GENE-050809-9
Ensembl - ENSDARG00000059902
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS16ENSG00000215305Homo sapiens
 Vps16ENSMUSG00000027411Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006925  Vps16, C-terminal
 IPR006926  Vps16, N-terminal
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016534  Vacuolar protein sorting-associated protein 16
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007033 vacuole organization IEA
 biological_processGO:0016197 endosomal transport IBA
 biological_processGO:0032889 regulation of vacuole fusion, non-autophagic IBA
 biological_processGO:0035542 regulation of SNARE complex assembly IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005765 lysosomal membrane IBA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0030897 HOPS complex IBA
 molecular_functionGO:0003779 actin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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