ENSDARG00000060109


Danio rerio

Features
Gene ID: ENSDARG00000060109
  
Biological name :aggf1
  
Synonyms : aggf1 / angiogenic factor with G patch and FHA domains 1
  
Possible biological names infered from orthology : AC008581.2 / Q7TN31 / Q8N302
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 7741781
Gene end: 7781697
  
Corresponding Affymetrix probe sets: Dr.17256.1.A1_at (Zebrafish Array)   NM_001079982_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000078815
Ensembl peptide - ENSDARP00000146953
NCBI entrez gene - 559905     See in Manteia.
RefSeq - NM_001079982
RefSeq - XM_021468864
RefSeq Peptide - NP_001073451
swissprot - F1RD88
ZFIN ID - ZDB-GENE-060929-836
Ensembl - ENSDARG00000060109
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000004311Gallus gallus
 AC008581.2ENSG00000285000Homo sapiens
 AGGF1ENSG00000164252Homo sapiens
 Aggf1ENSMUSG00000021681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000253  Forkhead-associated (FHA) domain
 IPR000467  G-patch domain
 IPR008984  SMAD/FHA domain superfamily
 IPR035624  AGGF1, OCRE domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IMP
 biological_processGO:0001570 vasculogenesis IMP
 biological_processGO:0045766 positive regulation of angiogenesis IBA
 biological_processGO:0051897 positive regulation of protein kinase B signaling IMP
 biological_processGO:0060217 hemangioblast cell differentiation IMP
 biological_processGO:0060841 venous blood vessel development IMP
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000180 caudal vein caudal vein absent , abnormal
caudal vein malformed , abnormal
Show

 ZFA:0000477 posterior cardinal vein posterior cardinal vein absent , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel morphology , abnormal
Show

 ZFA:0001286 caudal vein plexus caudal vein plexus apoptotic process increased process quality , abnormal
Show

 ZFA:0005010 mid cerebral vein mid cerebral vein immature , abnormal
Show

 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel morphology , abnormal
dorsal longitudinal anastomotic vessel immature , abnormal
Show

 ZFA:0005035 subintestinal vein subintestinal vein absent , abnormal
Show

 ZFA:0005605 lymphangioblast cord lymphangioblast cord cell decreased amount , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr