ENSDARG00000060638


Danio rerio

Features
Gene ID: ENSDARG00000060638
  
Biological name :si:ch211-276c2.2
  
Synonyms : si:ch211-276c2.2
  
Possible biological names infered from orthology : calsyntenin 2 / CLSTN2 / Q9ER65 / Q9H4D0
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 41555593
Gene end: 41664198
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126839
NCBI entrez gene - 569664     See in Manteia.
swissprot - R4GEC6
ZFIN ID - ZDB-GENE-121214-77
Ensembl - ENSDARG00000060638
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLSTN2ENSGALG00000037387Gallus gallus
 CLSTN2ENSG00000158258Homo sapiens
 Clstn2ENSMUSG00000032452Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clstn2 / calsyntenin 2 / Q9ER65* / Q9H4D0*ENSDARG0000006063763
clstn1 / calsyntenin 1 / O94985* / Q9EPL2* / Calsyntenin-1 Soluble Alc-alpha CTF1-alpha*ENSDARG0000003172048
clstn3 / calsyntenin 3 / Q99JH7* / Q9BQT9* / Mus musculus calsyntenin 3 (Clstn3), transcript variant 2, mRNA.*ENSDARG0000007388342


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR015919  Cadherin-like
 IPR026914  Calsyntenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr