ENSDARG00000061370


Danio rerio

Features
Gene ID: ENSDARG00000061370
  
Biological name :tsen34
  
Synonyms : tsen34 / TSEN34 tRNA splicing endonuclease subunit
  
Possible biological names infered from orthology : Q8BMZ5 / Q9BSV6 / tRNA splicing endonuclease subunit 34 / tRNA-splicing endonuclease subunit Sen34
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 41542542
Gene end: 41547318
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000081879
NCBI entrez gene - 565995     See in Manteia.
swissprot - A2BIL9
ZFIN ID - ZDB-GENE-050419-115
Ensembl - ENSDARG00000061370
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9BSV6ENSG00000170892Homo sapiens
 Q8BMZ5ENSMUSG00000035585Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006677  tRNA intron endonuclease, catalytic domain-like
 IPR016690  tRNA-splicing endonuclease, SEN34 subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000379 tRNA-type intron splice site recognition and cleavage IBA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000213 tRNA-intron endonuclease activity IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0016829 lyase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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