ENSMUSG00000035585


Mus musculus

Features
Gene ID: ENSMUSG00000035585
  
Biological name :Tsen34
  
Synonyms : Q8BMZ5 / tRNA-splicing endonuclease subunit Sen34 / Tsen34
  
Possible biological names infered from orthology : Q9BSV6 / tRNA splicing endonuclease subunit 34
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A1
Gene start: 3692863
Gene end: 3701024
  
Corresponding Affymetrix probe sets: 10549582 (MoGene1.0st)   1431593_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000104270
Ensembl peptide - ENSMUSP00000145965
Ensembl peptide - ENSMUSP00000145687
Ensembl peptide - ENSMUSP00000145563
Ensembl peptide - ENSMUSP00000123614
Ensembl peptide - ENSMUSP00000120403
Ensembl peptide - ENSMUSP00000118816
Ensembl peptide - ENSMUSP00000118440
Ensembl peptide - ENSMUSP00000046911
Ensembl peptide - ENSMUSP00000104267
Ensembl peptide - ENSMUSP00000104269
NCBI entrez gene - 66078     See in Manteia.
MGI - MGI:1913328
RefSeq - XM_017312226
RefSeq - NM_001164204
RefSeq - NM_001164205
RefSeq - NM_024168
RefSeq - XM_006540280
RefSeq - XM_017312222
RefSeq - XM_017312223
RefSeq - XM_017312224
RefSeq - XM_017312225
RefSeq Peptide - NP_001157677
RefSeq Peptide - NP_001157676
RefSeq Peptide - NP_077130
swissprot - D3YWG5
swissprot - Q8BMZ5
swissprot - A0A0U1RNS7
swissprot - A0A0U1RNH2
swissprot - H7BX14
swissprot - D3YZ84
swissprot - A0A0U1RPF7
swissprot - D6RH65
swissprot - D3YY06
Ensembl - ENSMUSG00000035585
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsen34ENSDARG00000061370Danio rerio
 Q9BSV6ENSG00000170892Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006676  tRNA-splicing endonuclease
 IPR006677  tRNA intron endonuclease, catalytic domain-like
 IPR016690  tRNA-splicing endonuclease, SEN34 subunit
 IPR036167  tRNA intron endonuclease, catalytic domain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000379 tRNA-type intron splice site recognition and cleavage IBA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0000213 tRNA-intron endonuclease activity IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016829 lyase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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