ENSDARG00000061468


Danio rerio

Features
Gene ID: ENSDARG00000061468
  
Biological name :ncaph
  
Synonyms : ncaph / non-SMC condensin I complex, subunit H
  
Possible biological names infered from orthology : Q15003 / Q8C156
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 28259655
Gene end: 28270945
  
Corresponding Affymetrix probe sets: Dr.18070.1.S1_at (Zebrafish Array)   Dr.18070.2.S1_at (Zebrafish Array)   Dr.3958.1.A1_at (Zebrafish Array)   NM_001080196_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000147180
Ensembl peptide - ENSDARP00000082118
NCBI entrez gene - 570062     See in Manteia.
RefSeq - NM_001080196
RefSeq - XM_021476302
RefSeq Peptide - NP_001073665
swissprot - A2BG39
ZFIN ID - ZDB-GENE-070112-652
Ensembl - ENSDARG00000061468
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NCAPHENSGALG00000032270Gallus gallus
 NCAPHENSG00000121152Homo sapiens
 NcaphENSMUSG00000034906Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR022816  Condensin complex subunit 2/barren


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000070 mitotic sister chromatid segregation IMP
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007076 mitotic chromosome condensation IEA
 biological_processGO:0030261 chromosome condensation IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:2000373 positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity IEA
 cellular_componentGO:0000796 condensin complex ISS
 cellular_componentGO:0000799 nuclear condensin complex IBA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0044547 DNA topoisomerase binding IBA
 molecular_functionGO:0072587 DNA topoisomerase (ATP-hydrolyzing) activator activity IBA


Pathways (from Reactome)
Pathway description
Condensation of Prometaphase Chromosomes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000152 retina retina decreased size , abnormal
retina nucleus increased size , abnormal
retina nucleus variability of shape , abnormal
Show

 ZFA:0001094 whole organism whole organism ploidy , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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