ENSDARG00000062457


Danio rerio

Features
Gene ID: ENSDARG00000062457
  
Biological name :las1l
  
Synonyms : las1l / LAS1-like, ribosome biogenesis factor
  
Possible biological names infered from orthology : A2BE28 / Q9Y4W2 / Ribosomal biosis protein LAS1L
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 22115250
Gene end: 22130937
  
Corresponding Affymetrix probe sets: Dr.21706.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000121984
NCBI entrez gene - 561321     See in Manteia.
RefSeq - NM_001126400
RefSeq Peptide - NP_001119872
swissprot - A2CF03
ZFIN ID - ZDB-GENE-030131-3625
Ensembl - ENSDARG00000062457
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LAS1LENSGALG00000043447Gallus gallus
 LAS1LENSG00000001497Homo sapiens
 Las1lENSMUSG00000057421Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007174  Las1-like
 IPR029058  Alpha/Beta hydrolase fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000460 maturation of 5.8S rRNA IBA
 biological_processGO:0000470 maturation of LSU-rRNA IBA
 biological_processGO:0000478 endonucleolytic cleavage involved in rRNA processing IBA
 biological_processGO:0006325 chromatin organization IBA
 cellular_componentGO:0030687 preribosome, large subunit precursor IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain malformed , abnormal
brain shortened , abnormal
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 ZFA:0000671 horizontal myoseptum horizontal myoseptum morphology , abnormal
Show

 ZFA:0001058 caudal fin caudal fin necrotic , abnormal
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 ZFA:0001094 whole organism whole organism decreased life span , abnormal
whole organism apoptotic process increased process quality , abnormal
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 ZFA:0005145 muscle muscle morphology , abnormal
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 ZFA:0009116 slow muscle cell slow muscle cell disorganized , abnormal
slow muscle cell shortened , abnormal
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 ZFA:0009117 fast muscle cell fast muscle cell disoriented , abnormal
fast muscle cell disorganized , abnormal
fast muscle cell shortened , abnormal
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 ZFA:0009244 primary motor neuron primary motor neuron morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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