ENSDARG00000062467


Danio rerio

Features
Gene ID: ENSDARG00000062467
  
Biological name :stra6l
  
Synonyms : stra6l / STRA6-like
  
Possible biological names infered from orthology : Q9DBN1 / Stimulated by retinoic acid 6 protein-like
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 12172322
Gene end: 12193239
  
Corresponding Affymetrix probe sets: Dr.16479.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113464
Ensembl peptide - ENSDARP00000120240
Ensembl peptide - ENSDARP00000084813
NCBI entrez gene - 100000104     See in Manteia.
RefSeq - NM_001089448
RefSeq Peptide - NP_001082917
swissprot - E9QJL6
swissprot - F1QCP7
ZFIN ID - ZDB-GENE-070410-116
Ensembl - ENSDARG00000062467
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9DBN1ENSMUSG00000028327Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
stra6 / F1RAX4 / stimulated by retinoic acid 6 / Q9BX79* / stimulated by retinoic acid gene 6*ENSDARG0000005187421


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye morphology , ameliorated
eye decreased size , abnormal
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 ZFA:0000119 retinal inner nuclear layer retinal inner nuclear layer disorganized , abnormal
retinal inner nuclear layer incomplete structure , abnormal
Show

 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium decreased thickness , abnormal
retinal pigmented epithelium melanosome decreased amount , abnormal
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 ZFA:0000152 retina retina photoreceptor outer segment decreased amount , abnormal
retina apoptotic , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased amount , abnormal
Show

 ZFA:0001114 head head decreased amount , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
Show

 ZFA:0001464 retinal outer nuclear layer retinal outer nuclear layer disorganized , abnormal
retinal outer nuclear layer incomplete structure , abnormal
retinal outer nuclear layer apoptotic process increased occurrence , abnormal
Show

 ZFA:0001466 photoreceptor outer segment layer photoreceptor outer segment layer photoreceptor outer segment disoriented , abnormal
photoreceptor outer segment layer photoreceptor outer segment disorganized , abnormal
Show

 ZFA:0009262 retinal cone cell retinal cone cell photoreceptor outer segment decreased length , abnormal
retinal cone cell photoreceptor outer segment mislocalised , abnormal
retinal cone cell photoreceptor outer segment decreased amount , abnormal
Show

 ZFA:0009275 retinal rod cell retinal rod cell photoreceptor outer segment decreased length , abnormal
retinal rod cell photoreceptor outer segment mislocalised , abnormal
retinal rod cell photoreceptor outer segment decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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