ENSDARG00000063190


Danio rerio

Features
Gene ID: ENSDARG00000063190
  
Biological name :zranb1b
  
Synonyms : A0JMQ9 / zinc finger, RAN-binding domain containing 1b / zranb1b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 8951449
Gene end: 8976307
  
Corresponding Affymetrix probe sets: Dr.14548.1.A1_at (Zebrafish Array)   NM_001077768_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000086546
NCBI entrez gene - 777720     See in Manteia.
RefSeq - NM_001077768
RefSeq Peptide - NP_001071236
swissprot - A0JMQ9
ZFIN ID - ZDB-GENE-061110-94
Ensembl - ENSDARG00000063190
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zranb1a / zinc finger, RAN-binding domain containing 1a / Q9UGI0* / ZRANB1* / zinc finger RANBP2-type containing 1*ENSDARG0000006025773
OTUD7A / si:dkey-37f18.2 / Q8R554* / Q8TE49* / OTU deubiquitinase 7A* / OTU domain-containing protein 7A *ENSDARG0000004555617
otud7b / OTU deubiquitinase 7B / B2RUR8* / Q6GQQ9* / OTU domain-containing protein 7B *ENSDARG0000001722017
tnfaip3 / tumor necrosis factor, alpha-induced protein 3 / P21580* / Q60769* / TNF alpha induced protein 3*ENSDARG0000002777715


Protein motifs (from Interpro)
Interpro ID Name
 IPR001876  Zinc finger, RanBP2-type
 IPR003323  OTU domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0007010 cytoskeleton organization IBA
 biological_processGO:0007420 brain development IGI
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0016477 cell migration ISS
 biological_processGO:0021551 central nervous system morphogenesis IMP
 biological_processGO:0022604 regulation of cell morphogenesis ISS
 biological_processGO:0030177 positive regulation of Wnt signaling pathway ISS
 biological_processGO:0035523 protein K29-linked deubiquitination IBA
 biological_processGO:0070536 protein K63-linked deubiquitination ISS
 biological_processGO:0071947 protein deubiquitination involved in ubiquitin-dependent protein catabolic process IBA
 biological_processGO:1990168 protein K33-linked deubiquitination IBA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IBA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070530 K63-linked polyubiquitin modification-dependent protein binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000106 extension extension aplastic , abnormal
Show

 ZFA:0000135 notochord notochord malformed , abnormal
Show

 ZFA:0000155 somite somite fused with somite , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curled , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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