ENSDARG00000067560


Danio rerio

Features
Gene ID: ENSDARG00000067560
  
Biological name :gtf2h3
  
Synonyms : general transcription factor IIH, polypeptide 3 / gtf2h3
  
Possible biological names infered from orthology : general transcription factor IIH subunit 3 / Q13889 / Q8VD76 / ral transcription factor IIH subunit 3
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 69650148
Gene end: 69660907
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000088015
NCBI entrez gene - 436837     See in Manteia.
RefSeq - NM_001128422
RefSeq Peptide - NP_001121894
swissprot - A5WWE3
ZFIN ID - ZDB-GENE-040718-302
Ensembl - ENSDARG00000067560
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2H3ENSGALG00000023682Gallus gallus
 GTF2H3ENSG00000111358Homo sapiens
 Gtf2h3ENSMUSG00000029387Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004600  TFIIH subunit Tfb4/GTF2H3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006412 translation IEA
 biological_processGO:0070816 phosphorylation of RNA polymerase II C-terminal domain IBA
 cellular_componentGO:0000439 core TFIIH complex IBA
 cellular_componentGO:0005675 holo TFIIH complex IBA
 molecular_functionGO:0003684 damaged DNA binding IBA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IBA
 molecular_functionGO:0008135 translation factor activity, RNA binding IBA
 molecular_functionGO:0008353 RNA polymerase II carboxy-terminal domain kinase activity IBA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
mRNA Capping
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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