ENSDARG00000069090


Danio rerio

Features
Gene ID: ENSDARG00000069090
  
Biological name :atp6v0d1
  
Synonyms : atp6v0d1 / ATPase H+ transporting V0 subunit d1 / Q6PGV1
  
Possible biological names infered from orthology : P51863 / P61421 / V-type proton ATPase subunit d 1
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 35086369
Gene end: 35094933
  
Corresponding Affymetrix probe sets: Dr.2032.1.A1_at (Zebrafish Array)   NM_199620_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000091027
Ensembl peptide - ENSDARP00000155990
NCBI entrez gene - 322811     See in Manteia.
RefSeq - NM_199620
RefSeq Peptide - NP_955914
swissprot - Q6PGV1
ZFIN ID - ZDB-GENE-030131-1531
Ensembl - ENSDARG00000069090
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATP6V0D1ENSGALG00000002237Gallus gallus
 P61421ENSG00000159720Homo sapiens
 P51863ENSMUSG00000013160Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002843  ATPase, V0 complex, c/d subunit
 IPR016727  ATPase, V0 complex, subunit d
 IPR035067  V-type ATPase subunit c


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0003406 retinal pigment epithelium development IMP
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006879 cellular iron ion homeostasis ISS
 biological_processGO:0007034 vacuolar transport IBA
 biological_processGO:0007035 vacuolar acidification IBA
 biological_processGO:0008057 eye pigment granule organization IMP
 biological_processGO:0015991 ATP hydrolysis coupled proton transport IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0032438 melanosome organization IMP
 biological_processGO:0035675 neuromast hair cell development IMP
 biological_processGO:0036295 cellular response to increased oxygen levels ISS
 biological_processGO:0039022 pronephric duct development IMP
 biological_processGO:0046688 response to copper ion IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0070986 left/right axis specification IMP
 cellular_componentGO:0005765 lysosomal membrane IBA
 cellular_componentGO:0005769 early endosome IBA
 cellular_componentGO:0005813 centrosome ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016471 vacuolar proton-transporting V-type ATPase complex IBA
 cellular_componentGO:0033179 proton-transporting V-type ATPase, V0 domain IEA
 molecular_functionGO:0008553 proton-exporting ATPase activity, phosphorylative mechanism IBA
 molecular_functionGO:0015078 proton transmembrane transporter activity IEA
 molecular_functionGO:0046961 proton-transporting ATPase activity, rotational mechanism IBA


Pathways (from Reactome)
Pathway description
ROS, RNS production in phagocytes
Insulin receptor recycling
Transferrin endocytosis and recycling
Ion channel transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle has fewer parts of type epithelial cell cilium, abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000135 notochord notochord undulate , abnormal
Show

 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium morphology , abnormal
retinal pigmented epithelium quality , abnormal
retinal pigmented epithelium increased thickness , abnormal
retinal pigmented epithelium malformed , abnormal
retinal pigmented epithelium vacuolated , abnormal
retinal pigmented epithelium physical object quality , abnormal
retinal pigmented epithelium melanosome malformed , abnormal
retinal pigmented epithelium melanosome broken , abnormal
retinal pigmented epithelium melanosome decreased size , abnormal
retinal pigmented epithelium translucent , abnormal
Show

 ZFA:0000150 pronephric duct pronephric duct cilium decreased amount , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
whole organism degenerate , abnormal
Show

 ZFA:0001114 head head cuboid , abnormal
head anterior-posterior axis decreased length , abnormal
head decreased pigmentation , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk decreased pigmentation , abnormal
Show

 ZFA:0001464 retinal outer nuclear layer retinal outer nuclear layer disorganized , abnormal
Show

 ZFA:0005169 intrahepatic bile duct intrahepatic bile duct distended , abnormal
intrahepatic bile duct decreased amount , abnormal
Show

 ZFA:0005220 larval melanophore stripe larval melanophore stripe melanocyte translucent , abnormal
Show

 ZFA:0009090 pigment cell pigment cell quality , abnormal
Show

 ZFA:0009091 melanocyte melanocyte punctate , abnormal
melanocyte structure , abnormal
melanocyte decreased size , abnormal
melanocyte increased size , abnormal
melanocyte malformed , abnormal
melanocyte translucent , abnormal
melanocyte degenerate , abnormal
melanocyte decreased pigmentation , abnormal
Show

 ZFA:0009154 eye photoreceptor cell eye photoreceptor cell malformed , abnormal
eye photoreceptor cell photoreceptor outer segment malformed , abnormal
eye photoreceptor cell photoreceptor outer segment elongated , abnormal
Show

 ZFA:0009367 neuromast hair cell neuromast hair cell non-motile cilium absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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