ENSDARG00000069423


Danio rerio

Features
Gene ID: ENSDARG00000069423
  
Biological name :tmie
  
Synonyms : tmie / transmembrane inner ear
  
Possible biological names infered from orthology : Q8K467 / Q8NEW7
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 2223837
Gene end: 2279311
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000112089
Ensembl peptide - ENSDARP00000091812
NCBI entrez gene - 555430     See in Manteia.
RefSeq - NM_001170648
RefSeq Peptide - NP_001164119
swissprot - F1QH03
swissprot - F1QA80
ZFIN ID - ZDB-GENE-061207-9
Ensembl - ENSDARG00000069423
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TMIEENSGALG00000005443Gallus gallus
 TMIEENSG00000181585Homo sapiens
 TmieENSMUSG00000049555Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR032006  Transmembrane inner ear expressed protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0048752 semicircular canal morphogenesis IMP
 biological_processGO:0048839 inner ear development IMP
 biological_processGO:0048884 neuromast development IMP
 biological_processGO:0048920 posterior lateral line neuromast primordium migration IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000168 anterior macula anterior macula hair cell decreased amount , abnormal
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 ZFA:0000217 inner ear inner ear hair cell decreased functionality , abnormal
inner ear decreased size , abnormal
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 ZFA:0000243 neuromast neuromast physical object quality , abnormal
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 ZFA:0000431 semicircular canal semicircular canal morphology , abnormal
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 ZFA:0000940 posterior lateral line neuromast posterior lateral line neuromast stereocilia tip link absent , abnormal
posterior lateral line neuromast stereocilium decreased diameter , abnormal
posterior lateral line neuromast stereocilium decreased amount , abnormal
posterior lateral line neuromast kinocilium decreased length , abnormal
posterior lateral line neuromast kinocilium decreased amount , abnormal
posterior lateral line neuromast physical object quality , abnormal
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 ZFA:0009238 afferent neuron afferent neuron has extra parts of type afferent neuron neuron projection, abnormal
afferent neuron has extra parts of type afferent neuron dendritic branch, abnormal
afferent neuron neuron projection development process quality , abnormal
afferent neuron neuron projection complexity , abnormal
afferent neuron neuron projection transient , abnormal
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 ZFA:0009363 neuromast support cell neuromast support cell lysosome increased amount , abnormal
Show

 ZFA:0009367 neuromast hair cell neuromast hair cell decreased amount , abnormal
neuromast hair cell lysosome increased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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