ENSDARG00000070479


Danio rerio

Features
Gene ID: ENSDARG00000070479
  
Biological name :tspan13b
  
Synonyms : tetraspanin 13b / tspan13b
  
Possible biological names infered from orthology : O95857 / Q9D8C2 / tetraspanin 13 / TSPAN13
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 30387999
Gene end: 30399876
  
Corresponding Affymetrix probe sets: Dr.18524.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120882
Ensembl peptide - ENSDARP00000094250
NCBI entrez gene - 449797     See in Manteia.
RefSeq - NM_001005970
RefSeq Peptide - NP_001005970
swissprot - A3KQ62
swissprot - Q5XJK6
ZFIN ID - ZDB-GENE-041010-45
Ensembl - ENSDARG00000070479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TSPAN13ENSGALG00000027240Gallus gallus
 O95857ENSG00000106537Homo sapiens
 Q9D8C2ENSMUSG00000020577Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tspan13a / tetraspanin 13a / O95857* / Q9D8C2* / TSPAN13* / tetraspanin 13*ENSDARG0000006888364
Q7ZUB3 / tspan31 / tetraspanin 31ENSDARG0000007455454
CU571398.1 / Q12999* / TSPAN31* / tetraspanin 31*ENSDARG000001142819


Protein motifs (from Interpro)
Interpro ID Name
 IPR000301  Tetraspanin
 IPR018499  Tetraspanin/Peripherin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007166 cell surface receptor signaling pathway IBA
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:1903169 regulation of calcium ion transmembrane transport IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005246 calcium channel regulator activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr