ENSDARG00000070623


Danio rerio

Features
Gene ID: ENSDARG00000070623
  
Biological name :med10
  
Synonyms : med10 / mediator complex subunit 10 / Q0VIA1
  
Possible biological names infered from orthology : Mediator of RNA polymerase II transcription subunit 10 / Q9BTT4 / Q9CXU0
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 27970292
Gene end: 27974151
  
Corresponding Affymetrix probe sets: Dr.16321.1.S1_at (Zebrafish Array)   Dr.16321.2.S1_at (Zebrafish Array)   Dr.16321.2.S1_a_at (Zebrafish Array)   NM_001017699_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094663
Ensembl peptide - ENSDARP00000116070
NCBI entrez gene - 550394     See in Manteia.
RefSeq - NM_001017699
RefSeq Peptide - NP_001017699
swissprot - Q0VIA1
ZFIN ID - ZDB-GENE-070117-2423
Ensembl - ENSDARG00000070623
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MED10ENSGALG00000028336Gallus gallus
 MED10ENSG00000133398Homo sapiens
 Med10ENSMUSG00000021598Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019145  Mediator complex, subunit Med10


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0036302 atrioventricular canal development IMP
 biological_processGO:1905072 cardiac jelly development IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016592 mediator complex IEA
 cellular_componentGO:0070847 core mediator complex IBA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood quality , abnormal
Show

 ZFA:0000009 cardiac ventricle cardiac ventricle spatial pattern , abnormal
cardiac ventricle increased distribution , abnormal
Show

 ZFA:0000114 heart heart malformed , abnormal
heart contractility , abnormal
heart quality , abnormal
Show

 ZFA:0000135 notochord notochord broken , abnormal
Show

 ZFA:0000471 atrium atrium spatial pattern , abnormal
atrium increased distribution , abnormal
Show

 ZFA:0001117 post-vent region post-vent region increased amount , abnormal
post-vent region decreased length , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin physical object quality , abnormal
Show

 ZFA:0001315 atrioventricular canal atrioventricular canal absent , abnormal
atrioventricular canal mislocalised , abnormal
atrioventricular canal endocardial cushion absent , abnormal
Show

 ZFA:0001317 endocardial cushion endocardial cushion absent , abnormal
Show

 ZFA:0001318 cardiac jelly cardiac jelly decreased amount , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0005073 atrioventricular ring atrioventricular ring morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr