ENSDARG00000074242


Danio rerio

Features
Gene ID: ENSDARG00000074242
  
Biological name :serbp1a
  
Synonyms : serbp1a / SERPINE1 mRNA binding protein 1a
  
Possible biological names infered from orthology : Plasminogen activator inhibitor 1 RNA-binding protein / Q8NC51 / Q9CY58 / SERBP1 / SERPINE1 mRNA binding protein 1
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 34931597
Gene end: 34938746
  
Corresponding Affymetrix probe sets: Dr.383.1.A1_at (Zebrafish Array)   NM_214714_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000115589
Ensembl peptide - ENSDARP00000149304
NCBI entrez gene - 335449     See in Manteia.
RefSeq - NM_214714
RefSeq - XM_009302506
RefSeq Peptide - NP_999879
swissprot - Q802Z9
swissprot - F1Q5Q3
ZFIN ID - ZDB-GENE-030131-7389
Ensembl - ENSDARG00000074242
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SERBP1ENSGALG00000011229Gallus gallus
 Q8NC51ENSG00000142864Homo sapiens
 Q9CY58ENSMUSG00000036371Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
serbp1b / SERPINE1 mRNA binding protein 1b / Q8NC51* / SERBP1* / SERPINE1 mRNA binding protein 1*ENSDARG0000008742172
zgc:103482 / HABP4* / Q5JVS0* / hyaluronan binding protein 4*ENSDARG0000002517441


Protein motifs (from Interpro)
Interpro ID Name
 IPR006861  Hyaluronan/mRNA-binding protein
 IPR027205  Plasminogen activator inhibitor 1 RNA-binding protein
 IPR032381  Intracellular hyaluronan-binding protein 4, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr