ENSDARG00000077372


Danio rerio

Features
Gene ID: ENSDARG00000077372
  
Biological name :tfr1b
  
Synonyms : tfr1b / transferrin receptor 1b
  
Possible biological names infered from orthology : P02786 / Q62351 / TFRC / transferrin receptor
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 26017094
Gene end: 26031204
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000122583
NCBI entrez gene - 494478     See in Manteia.
RefSeq - NM_001009918
RefSeq Peptide - NP_001009918
swissprot - E9QGG9
ZFIN ID - ZDB-GENE-041220-2
Ensembl - ENSDARG00000077372
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TFRCENSGALG00000007485Gallus gallus
 TFRCENSG00000072274Homo sapiens
 TfrcENSMUSG00000022797Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tfr1a / transferrin receptor 1a / TFRC* / Q62351* / P02786* / transferrin receptor*ENSDARG0000010132247
tfr2 / transferrin receptor 2 / Q9UP52*ENSDARG0000010372732
si:ch211-214j8.1 / Q7M758* / Q9UQQ1* / NAALADL1* / N-acetylated alpha-linked acidic dipeptidase like 1* / N-acetylated-alpha-linked acidic dipeptidase-like protein *ENSDARG0000002095223
naalad2 / N-acetylated alpha-linked acidic dipeptidase 2 / FOLH1* / Q04609* / Q9Y3Q0* / folate hydrolase 1*ENSDARG0000002138321


Protein motifs (from Interpro)
Interpro ID Name
 IPR003137  PA domain
 IPR007365  Transferrin receptor-like, dimerisation domain
 IPR007484  Peptidase M28
 IPR029513  Transferrin receptor protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006879 cellular iron ion homeostasis IMP
 biological_processGO:0033572 transferrin transport IEA
 biological_processGO:0042541 hemoglobin biosynthetic process IMP
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0033570 transferrin transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Golgi Associated Vesicle Biogenesis
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Transferrin endocytosis and recycling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism decreased size , abnormal
Show

 ZFA:0001115 trunk trunk curved , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr