ENSDARG00000077530


Danio rerio

Features
Gene ID: ENSDARG00000077530
  
Biological name :ahctf1
  
Synonyms : ahctf1 / AT hook containing transcription factor 1
  
Possible biological names infered from orthology : Protein ELYS / Q8CJF7 / Q8WYP5
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 12220781
Gene end: 12249990
  
Corresponding Affymetrix probe sets: Dr.121.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000128519
Ensembl peptide - ENSDARP00000143358
NCBI entrez gene - 553494     See in Manteia.
swissprot - A0A286Y877
swissprot - X1WE68
ZFIN ID - ZDB-GENE-070521-2
Ensembl - ENSDARG00000077530
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AHCTF1ENSGALG00000010630Gallus gallus
 AHCTF1ENSG00000153207Homo sapiens
 Ahctf1ENSMUSG00000026491Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR025151  ELYS-like domain
 IPR032040  ELYS, beta-propeller domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048565 digestive tract development IMP
 biological_processGO:0051292 nuclear pore complex assembly IMP


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
RHO GTPases Activate Formins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain degenerate , abnormal
Show

 ZFA:0000056 pharynx pharynx has fewer parts of type goblet cell , abnormal
pharynx goblet cell decreased amount , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
Show

 ZFA:0000123 liver liver decreased size , abnormal
Show

 ZFA:0000140 pancreas pancreas quality , abnormal
pancreas decreased size , abnormal
Show

 ZFA:0000143 retinal photoreceptor layer retinal photoreceptor layer disorganized , abnormal
retinal photoreceptor layer decreased size , abnormal
Show

 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium increased size , abnormal
Show

 ZFA:0000152 retina retina nuclear pore mislocalised , abnormal
retina nuclear pore disorganized , abnormal
retina apoptotic , abnormal
retina disorganized , abnormal
retina nuclear pore decreased amount , abnormal
retina morphology , abnormal
Show

 ZFA:0000282 sensory system sensory system quality , abnormal
Show

 ZFA:0000435 cranial nerve II cranial nerve II decreased diameter , abnormal
Show

 ZFA:0000445 optic tectum optic tectum necrotic , abnormal
optic tectum apoptotic , abnormal
Show

 ZFA:0000706 posterior intestine posterior intestine nuclear pore decreased amount , abnormal
Show

 ZFA:0001076 intestinal bulb intestinal bulb enterocyte decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
Show

 ZFA:0001114 head head shape , abnormal
head decreased size , abnormal
Show

 ZFA:0001155 enteric nervous system enteric nervous system neuron decreased amount , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas morphology , abnormal
Show

 ZFA:0001323 mid intestine mid intestine goblet cell decreased amount , abnormal
Show

 ZFA:0001330 retinal outer plexiform layer retinal outer plexiform layer disorganized , abnormal
retinal outer plexiform layer decreased size , abnormal
Show

 ZFA:0001338 intestine intestine nuclear pore mislocalised , abnormal
intestine nuclear pore disorganized , abnormal
intestine morphology , abnormal
intestine apoptotic , abnormal
intestine has fewer parts of type goblet cell , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage hypotrophic , abnormal
Show

 ZFA:0005124 intestinal epithelium intestinal epithelium nuclear pore decreased amount , abnormal
intestinal epithelium cell detached from intestinal epithelium , abnormal
intestinal epithelium cell disorganized , abnormal
intestinal epithelium decreased thickness , abnormal
intestinal epithelium surface feature shape , abnormal
intestinal epithelium enteroendocrine cell decreased amount , abnormal
Show

 ZFA:0005126 intestinal bulb epithelium intestinal bulb epithelium decreased thickness , abnormal
intestinal bulb epithelium surface feature shape , abnormal
intestinal bulb epithelium nuclear pore absent , abnormal
Show

 ZFA:0005128 posterior intestine epithelium posterior intestine epithelium goblet cell absent , abnormal
Show

 ZFA:0009269 enterocyte enterocyte nucleus shape , abnormal
enterocyte nucleus mislocalised , abnormal
Show

 ZFA:0009275 retinal rod cell retinal rod cell decreased amount , abnormal
Show

 ZFA:0009310 retinal ganglion cell retinal ganglion cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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