ENSDARG00000078567


Danio rerio

Features
Gene ID: ENSDARG00000078567
  
Biological name :lonrf1l
  
Synonyms : LON peptidase N-terminal domain and ring finger 1, like / lonrf1l
  
Possible biological names infered from orthology : LON peptidase N-terminal domain and ring finger 1 / LONRF1 / Q17RB8
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 13700605
Gene end: 13788311
  
Corresponding Affymetrix probe sets: Dr.25639.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000123656
Ensembl peptide - ENSDARP00000130965
NCBI entrez gene - 100317496     See in Manteia.
RefSeq - NM_001277234
RefSeq Peptide - NP_001264163
swissprot - F1QJQ0
ZFIN ID - ZDB-GENE-081104-397
Ensembl - ENSDARG00000078567
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LONRF1ENSGALG00000013725Gallus gallus
 LONRF1ENSG00000154359Homo sapiens
 Lonrf1ENSMUSG00000039633Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lonrf1 / LON peptidase N-terminal domain and ring finger 1ENSDARG0000007504832
si:ch1073-440b2.1 / LONRF2* / Q1L5Z9* / LON peptidase N-terminal domain and ring finger 2*ENSDARG0000008913830


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003111  Lon, substrate-binding domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015947  PUA-like superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR019734  Tetratricopeptide repeat
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0005622 intracellular IBA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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