ENSDARG00000078802


Danio rerio

Features
Gene ID: ENSDARG00000078802
  
Biological name :rnf111
  
Synonyms : ring finger protein 111 / rnf111
  
Possible biological names infered from orthology : Mus musculus ring finger 111 (Rnf111), transcript variant 2, mRNA. / Q6ZNA4 / Q99ML9
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 30561588
Gene end: 30624435
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000137956
Ensembl peptide - ENSDARP00000142644
Ensembl peptide - ENSDARP00000142752
Ensembl peptide - ENSDARP00000142775
Ensembl peptide - ENSDARP00000101817
NCBI entrez gene - 100151141     See in Manteia.
RefSeq - NM_001281993
RefSeq - XM_001922673
RefSeq - XM_005168925
RefSeq Peptide - NP_001268922
swissprot - N0A274
swissprot - F1QWE1
swissprot - R4KWC4
swissprot - R4L6W8
ZFIN ID - ZDB-GENE-070808-2
Ensembl - ENSDARG00000078802
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF111ENSGALG00000004171Gallus gallus
 Q6ZNA4ENSG00000157450Homo sapiens
 Q99ML9ENSMUSG00000032217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf165b / ring finger protein 165b / Q6ZSG1* / E9QAU8* / RNF165* / ring finger protein 165*ENSDARG0000007881713
rnf165a / ring finger protein 165a / Q6ZSG1* / E9QAU8* / RNF165* / ring finger protein 165*ENSDARG0000007790612


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR029306  E3 ubiquitin-protein ligase Arkadia, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0021501 prechordal plate formation IMP
 biological_processGO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway IBA
 biological_processGO:0030579 ubiquitin-dependent SMAD protein catabolic process IBA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IBA
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IMP
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
Formation of Incision Complex in GG-NER
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism bulbous , abnormal
Show

 ZFA:0001176 blastoderm blastoderm decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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