ENSDARG00000078911


Danio rerio

Features
Gene ID: ENSDARG00000078911
  
Biological name :zgc:163098
  
Synonyms : zgc:163098
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 37290260
Gene end: 37312953
  
Corresponding Affymetrix probe sets: Dr.2575.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000097831
Ensembl peptide - ENSDARP00000101139
Ensembl peptide - ENSDARP00000110081
NCBI entrez gene - 100037380     See in Manteia.
RefSeq - NM_001089532
RefSeq Peptide - NP_001083001
swissprot - F1QQI7
swissprot - A5PN19
swissprot - F1QSP9
ZFIN ID - ZDB-GENE-070410-141
Ensembl - ENSDARG00000078911
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
u2surp / U2 snRNP-associated SURP domain containing / O15042* / Q6NV83*ENSDARG0000006149056


Protein motifs (from Interpro)
Interpro ID Name
 IPR000061  SWAP/Surp
 IPR000504  RNA recognition motif domain
 IPR006569  CID domain
 IPR008942  ENTH/VHS
 IPR013170  mRNA splicing factor Cwf21 domain
 IPR035009  SR140, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr